SBML-PET-MPI: a parallel parameter estimation tool for Systems Biology Markup Language based models
08.02.2011
Zi Z
Bioinformatics. 2011;27(7):1028-9.
Parameter estimation is crucial for the modeling and dynamic analysis of biological systems. However, implementing parameter estimation is time consuming and computationally demanding. Here, we introduced a parallel parameter estimation tool for Systems Biology Markup Language based models (SBML-PET-MPI). SBML-PET-MPI allows the user to perform parameter estimation and parameter uncertainty analysis by collectively fitting multiple experimental datasets by running in multi-cores computers/clusters.
