Publications, peer-reviewed (since 2003)

• Phosphoproteomics identifies dual-site phosphorylation in an extended basophilic motif regulating FILIP1-mediated degradation of filamin-C.
  Reimann L, Schwäble AN, Fricke AL, Mühlhäuser WWD, Leber Y, Lohanadan K, Puchinger MG, Schäuble S, Faessler E, Wiese H, Reichenbach C, Knapp B, Peikert CD, Drepper F, Hahn U, Kreutz C, van der Ven PFM, Radziwill G, Djinović-Carugo K, Fürst DO, Warscheid B.
  Commun Biol. 2020 May 22;3(1):253.
• Cullin 3 Is Crucial for Pro-B Cell Proliferation, Interacts with CD22, and Controls CD22 Internalization on B Cells.
  Meyer SJ, Böser A, Korn MA, Koller C, Bertocci B, Reimann L, Warscheid B, Nitschke L.
  J Immunol. 2020 Jun 15;204(12):3360-3374.
• Defining the Substrate Spectrum of the TIM22 Complex Identifies Pyruvate Carrier Subunits as Unconventional Cargos
  Gomkale R, Cruz-Zaragoza LD, Suppanz I, Guiard B, Montoya J, Callegari S, Pacheu-Grau D, Warscheid B, Rehling P.
  Curr Biol. 2020 Mar 23;30(6):1119-1127.e5.
• Homologue replacement in the import motor of the mitochondrial inner membrane of trypanosomes.
  von Känel C, Muñoz-Gómez SA, Oeljeklaus S, Wenger C, Warscheid B, Wideman JG, Harsman A, Schneider A.
  Elife. 2020 Feb 27;9. pii: e52560.
• COA6 Facilitates Cytochrome c Oxidase Biogenesis as Thiol-reductase for Copper Metallochaperones in Mitochondria.
  Pacheu-Grau D, Wasilewski M, Oeljeklaus S, Gibhardt CS, Aich A, Chudenkova M, Dennerlein S, Deckers M, Bogeski I, Warscheid B, Chacinska A, Rehling P.
  J Mol Biol. 2020 Feb 13. [Epub ahead of print]
• Noncompetitive binding of PpiD and YidC to the SecYEG translocon expands the global view on the SecYEG interactome in Escherichia coli.
  Jauss B, Petriman NA, Drepper F, Franz L, Sachelaru I, Welte T, Steinberg R, Warscheid B, Koch HG (2019).
  J Biol Chem. 294(50):19167-19183.
• The highly diverged trypanosomal MICOS complex is organized in a non-essential integral membrane and an essential peripheral module.
  Eichenberger C, Oeljeklaus S, Bruggisser J, Mani J, Haenni B, Kaurov I, Niemann M, Zuber B, Lukeš J, Hashimi H, Warscheid B, Schimanski B, Schneider A (2019).
  Mol Microbiol. 112(6):1731-1743.
• Evolutionary divergent PEX3 is essential for glycosome biogenesis and survival of trypanosomatid parasites.
  Kalel VC, Li M, Gaussmann S, Delhommel F, Schäfer AB, Tippler B, Jung M, Maier R, Oeljeklaus S, Schliebs W, Warscheid B, Sattler M, Erdmann R (2019).
  Biochim Biophys Acta Mol Cell Res. 1866(12):118520.
• Surface-exposed domains of TatB involved in the structural and functional assembly of the Tat translocase in Escherichia coli.
  Fröbel J, Blümmel AS, Drepper F, Warscheid B, Müller M (2019).
  J Biol Chem. 294(38):13902-13914.
• Mitochondrial protein translocation-associated degradation.
  Mårtensson CU, Priesnitz C, Song J, Ellenrieder L, Doan KN, Boos F, Floerchinger A, Zufall N, Oeljeklaus S, Warscheid B, Becker T (2019).
  Nature. 569(7758):679-683.
• Light-controlled affinity purification of protein complexes exemplified by the resting ZAP70 interactome.
  Hörner M, Eble J, Yousefi OS, Schwarz J, Warscheid B, Weber W, Schamel WWA (2019).
  Front Immunol. 10:226.
• Mitochondrial proteins: from biogenesis to functional networks.
  Pfanner N, Warscheid B, Wiedemann N (2019).
  Nat Rev Mol Cell Biol. 20(5):267-284
• Recruitment of cytosolic J-Proteins by TOM receptors promotes mitochondrial protein biogenesis.
  Opaliński Ł, Song J, Priesnitz C, Wenz LS, Oeljeklaus S, Warscheid B, Pfanner N, Becker T (2018).
  Cell Rep. 25(8):2036-2043.e5.
• The diverged Trypanosome MICOS complex as a hub for mitochondrial cristae shaping and protein import.
  Kaurov I, Vancová M, Schimanski B, Cadena LR, Heller J, Bílý T, Potěšil D, Eichenberger C, Bruce H, Oeljeklaus S, Warscheid B, Zdráhal Z, Schneider A, Lukeš J, Hashimi H (2018).
  Curr Biol. 28(21):3393-3407.e5.
• The deubiquitination of the PTS1-import receptor Pex5p is required for peroxisomal matrix protein import.
  El Magraoui F, Brinkmeier R, Mastalski T, Hupperich A, Strehl C, Schwerter D, Girzalsky W, Meyer HE, Warscheid B, Erdmann R, Platta HW (2018).
  Biochim Biophys Acta Mol Cell Res. 1866(2):199-213.
• Using pull down strategies to analyze the interactome of peroxisomal membrane proteins in human cells.
  Klümper J, Oeljeklaus S, Warscheid B, Erdmann R, Schliebs W (2018).
  Subcell Biochem. 89:261-285.
• Defining the mammalian peroxisomal proteome.
  Yifrach E, Fischer S, Oeljeklaus S, Schuldiner M, Zalckvar E, Warscheid B (2018).
  Subcell Biochem. 89:47-66.
• Complete native stable isotope labeling by amino acids of saccharomyces cerevisiae for global proteomic analysis
  Dannenmaier S, Stiller SB, Morgenstern M, Lübbert P, Oeljeklaus S, Wiedemann N, Warscheid B (2018)
  Anal Chem. 90(17):10501-10509.
• Vps39 interacts with Tom40 to establish one of two functionally distinct vacuole-mitochondria contact sites.
  González Montoro A, Auffarth K, Hönscher C, Bohnert M, Becker T, Warscheid B, Reggiori F, van der Laan M, Fröhlich F, Ungermann C (2018).
  Dev Cell. 45(5):621-636.e7.
• Quantitative proteomics identifies redox switches for global translation modulation by mitochondrially produced reactive oxygen species.
  Topf U, Suppanz I, Samluk L, Wrobel L, Böser A, Sakowska P, Knapp B, Pietrzyk MK, Chacinska A, Warscheid B (2018).
  Nat Commun. 9(1):324.
• The mitochondrial TMEM177 associates with COX20 during COX2 biogenesis.
  Lorenzi I, Oeljeklaus S, Aich A, Ronsör C, Callegari S, Dudek J, Warscheid B, Dennerlein S, Rehling P (2018)
  Biochim Biophys Acta. 1865(2):323-333.
• The interaction network of the YidC insertase with the SecYEG translocon, SRP and the SRP receptor FtsY.
  Petriman NA, Jauß B, Hufnagel A, Franz L, Sachelaru I, Drepper F, Warscheid B, Koch HG (2018).
  Sci Rep. 8(1):578.
• Biogenesis of the mitochondrial DNA inheritance machinery in the mitochondrial outer membrane of Trypanosoma brucei.
  Käser S, Willemin M, Schnarwiler F, Schimanski B, Poveda-Huertes D, Oeljeklaus S, Haenni B, Zuber B, Warscheid B, Meisinger C, Schneider A (2017).
  PLoS Pathog. 13(12):e1006808.
• INA complex liaises the F1Fo-ATP synthase membrane motor modules.
  Naumenko N, Morgenstern M, Rucktäschel R, Warscheid B, Rehling P (2017).
  Nat Commun. 8(1):1237.
• Structural features of the TatC membrane protein that determine docking and insertion of a twin-arginine signal peptide.
  Blümmel AS, Drepper F, Knapp B, Eimer E, Warscheid B, Müller M, Fröbel J (2017).
  J Biol Chem. 292(52):21320-21329
• Identification of new channels by systematic analysis of the mitochondrial outer membrane.
  Krüger V, Becker T, Becker L, Montilla-Martinez M, Ellenrieder L, Vögtle FN, Meyer HE, Ryan MT, Wiedemann N, Warscheid B, Pfanner N, Wagner R, Meisinger C (2017).
  J Cell Biol. 216(11):3485-3495.
• tRNAs and proteins use the same import channel for translocation across the mitochondrial outer membrane of trypanosomes.
  Niemann M, Harsman A, Mani J, Peikert CD, Oeljeklaus S, Warscheid B, Wagner R, Schneider A (2017).
  Proc Natl Acad Sci U S A. 114(37):E7679-E7687
• A trypanosomal orthologue of an intermembrane space chaperone has a non-canonical function in biogenesis of the single mitochondrial inner membrane protein translocase.
  Wenger C, Oeljeklaus S, Warscheid B, Schneider A, Harsman A (2017).
  PLoS Pathog. 13(8):e1006550.
• Membrane localization of acetylated CNK1 mediates a positive feedback on RAF/ERK signaling.
  Fischer A, Mühlhäuser WWD, Warscheid B, Radziwill G (2017).
  Sci Adv. 3(8):e1700475.
• Definition of a high-confidence mitochondrial proteome at quantitative scale.
  Morgenstern M, Stiller SB, Lübbert P, Peikert CD, Dannenmaier S, Drepper F, Weill U, Höß P, Feuerstein R, Gebert M, Bohnert M, van der Laan M, Schuldiner M, Schütze C, Oeljeklaus S, Pfanner N, Wiedemann N, Warscheid B (2017).
  Cell Rep. 19(13):2836-2852.
• The BTG2-PRMT1 module limits pre-B cell expansion by regulating the CDK4-Cyclin-D3 complex.
  Dolezal E, Infantino S, Drepper F, Börsig T, Singh A, Wossning T, Fiala GJ, Minguet S, Warscheid B, Tarlinton DM, Jumaa H, Medgyesi D, Reth M (2017).
  Nat Immunol. 18(8):911-920.
• Saccharomyces cerevisiae cells lacking Pex3 contain membrane vesicles that harbor a subset of peroxisomal membrane proteins.
  Wróblewska JP, Cruz-Zaragoza LD, Yuan W, Schummer A, Chuartzman SG, de Boer R, Oeljeklaus S, Schuldiner M, Zalckvar E, Warscheid B, Erdmann R, van der Klei IJ (2017).
  Biochim Biophys Acta. 1864(10):1656-1667
• Charting organellar importomes by quantitative mass spectrometry.
  Peikert CD, Mani J, Morgenstern M, Sandro K, Knapp B, Wenger C, Harsman A, Oeljeklaus S, Schneider A, Warscheid B (2017).
  Nat Commun. 8:15272.
• Study of peroxisomal protein phosphorylation by functional proteomics.
  Schummer A, Fischer S, Oeljeklaus S, Warscheid B (2017).
  Methods Mol Biol. 1595:267-289.
• Identification of Novel STAT6-Regulated Proteins in Mouse B Cells by Comparative Transcriptome and Proteome Analysis.
  Mokada-Gopal L, Boeser A, Lehmann CH, Drepper F, Dudziak D, Warscheid B, Voehringer D (2017).
  J Immunol. 198(9):3737-3745
• Mic10, a Core Subunit of the Mitochondrial Contact Site and Cristae Organizing System, Interacts with the Dimeric F1Fo-ATP Synthase.
  Rampelt H, Bohnert M, Zerbes RM, Horvath SE, Warscheid B, Pfanner N, van der Laan M (2017).
  J Mol Biol. 429(8):1162-1170.
• PLK1 (polo like kinase 1) inhibits MTOR complex 1 and promotes autophagy.
  Ruf S, Heberle AM, Langelaar-Makkinje M, Gelino S, Wilkinson D, Gerbeth C, Schwarz JJ, Holzwarth B, Warscheid B, Meisinger C, van Vugt MA, Baumeister R, Hansen M, Thedieck K (2017).
  Autophagy. 13(3):486-505.
• AKT-dependent phosphorylation of the SAM domain induces oligomerization and activationof the scaffold protein CNK1.
  Fischer A, Weber W, Warscheid B, Radziwill G (2017).
  Biochim Biophys Acta. 1864(1):89-100
• Myofibrillar Z-discs are a protein phosphorylation hot spot with PKC α modulating protein dynamics.
  Reimann L, Wiese H, Leber Y, Schwäble AN, Fricke AL, Rohland A, Knapp B, Peikert CD, Drepper F, van der Ven PF, Radziwill G, Fürst DO, Warscheid B (2017).
  Mol Cell Proteomics. 16(3):346-367.
• The non-canonical mitochondrial inner membrane presequence translocase of trypanosomatids contains two essential rhomboid-like proteins.
  Harsman A, Oeljeklaus S, Wenger C, Huot JL, Warscheid B, Schneider A (2016).
  Nat Commun. 7:13707. doi: 10.1038/ncomms13707.
• Optogenetic clustering of CNK1 reveals mechanistic insights in RAF and AKT signalling controlling cell fate decisions.
  Fischer A, Warscheid B, Weber W, Radziwill G (2016).
  Sci Rep. 6:38155.
• A systems study reveals concurrent activation of AMPK and mTOR by amino acids.
  Dalle Pezze P, Ruf S, Sonntag AG, Langelaar-Makkinje M, Hall P, Heberle AM, Razquin Navas P, van Eunen K, Tölle RC, Schwarz JJ, Wiese H, Warscheid B, Deitersen J, Stork B, Fäßler E, Schäuble S, Hahn U, Horvatovich P, Shanley DP, Thedieck K.
  Nat Commun. 2016 Nov 21;7:13254. doi: 10.1038/ncomms13254.
• Phospho-ubiquitin-PARK2 complex as a marker for mitophagy defects.
  Callegari S, Oeljeklaus S, Warscheid B, Dennerlein S, Thumm M, Rehling P, Dudek J.
  Autophagy. 2016 Nov 15:1-11. [Epub ahead of print]
• Pex17p-dependent assembly of Pex14p/Dyn2p-subcomplexes of the peroxisomal protein import machinery.
  Chan A, Schummer A, Fischer S, Schröter T, Cruz-Zaragoza LD, Bender J, Drepper F, Oeljeklaus S, Kunau WH, Girzalsky W, Warscheid B, Erdmann R (2016).
  Eur J Cell Biol. 95(12):585-597.
• Expanding the archaellum regulatory network - the eukaryotic protein kinases ArnC and ArnD influence motility of Sulfolobus acidocaldarius.
  Hoffmann L, Schummer A, Reimann J, Haurat MF, Wilson AJ, Beeby M, Warscheid B, Albers SV.
  Microbiologyopen. 2016 Oct 22. [Epub ahead of print]
• Xilmass: a new approach towards the identification of cross-linked peptides.
  Yılmaz Ş, Drepper F, Hulstaert N, Cernic M, Gevaert K, Economou A, Warscheid B, Martens L, Vandermarliere E (2016).
  Anal Chem. 88(20):9949-9957.
• The ribosome-associated Mba1 escorts Cox2 from insertion machinery to maturing assembly intermediates.
  Lorenzi I, Oeljeklaus S, Ronsör C, Bareth B, Warscheid B, Rehling P, Dennerlein S.
  Mol Cell Biol. 2016 Aug 22. [Epub ahead of print]
• Outer membrane protein functions as integrator of protein import and DNA inheritance in mitochondria.
  Käser S, Oeljeklaus S, Týč J, Vaughan S, Warscheid B, Schneider A (2016).
  Proc Natl Acad Sci U S A. 113(31):E4467-75.
• Mitochondrial OXA Translocase Plays a Major Role in Biogenesis of Inner-Membrane Proteins.
  Stiller SB, Höpker J, Oeljeklaus S, Schütze C, Schrempp SG, Vent-Schmidt J, Horvath SE, Frazier AE, Gebert N, van der Laan M, Bohnert M, Warscheid B, Pfanner N, Wiedemann N (2016).
  Cell Metab. 23(5):901-8.
• The Hsp70 homolog Ssb and the 14-3-3 protein Bmh1 jointly regulate transcription of glucose repressed genes in Saccharomyces cerevisiae.
  Hübscher V, Mudholkar K, Chiabudini M, Fitzke E, Wölfle T, Pfeifer D, Drepper F, Warscheid B, Rospert S (2016).
  Nucleic Acids Res. 44(12):5629-45
• Identification of Cell Cycle Dependent Interaction Partners of the Septins by Quantitative Mass Spectrometry.
  Renz C, Oeljeklaus S, Grinhagens S, Warscheid B, Johnsson N, Gronemeyer T (2016).
  PLoS One. 11(2):e0148340.
• Regulation of peroxisome dynamics by phosphorylation.
  Oeljeklaus S, Schummer A, Mastalski T, Platta HW, Warscheid B (2016)
  Biochim Biophys Acta. ;1863(5):1027-37.
• Ribosome binding induces repositioning of the signal recognition particle receptor on the translocon.
  Kuhn P, Draycheva A, Vogt A, Petriman NA, Sturm L, Drepper F, Warscheid B, Wintermeyer W, Koch HG (2015).
  J Cell Biol. 211(1):91-104.
• Structural insights into cargo recognition by the yeast PTS1-receptor.
  Hagen S, Drepper F, Fischer S, Fodor K, Passon D, Platta H, Zenn M, Schliebs W, Girzalsky W, Wilmanns M, Warscheid B, Erdmann R (2015).
  J Biol Chem. 290(44):26610-26
• MITRAC7 Acts as a COX1-Specific Chaperone and Reveals a Checkpoint during Cytochrome c Oxidase Assembly.
  Dennerlein S, Oeljeklaus S, Jans D, Hellwig C, Bareth B, Jakobs S, Deckers M, Warscheid B, Rehling P (2015).
  Cell Rep. 12(10):1644-55.
• Differential tyrosine phosphorylation controls the function of CNK1 as a molecular switch in signal transduction.
  Fischer A, Brummer T, Warscheid B, Radziwill G (2015).
  Biochim Biophys Acta. 1853(11 Pt A):2847-55.
• Mistargeted mitochondrial proteins activate a proteostatic response in the cytosol.
  Wrobel L, Topf U, Bragoszewski P, Wiese S, Sztolsztener ME, Oeljeklaus S, Varabyova A, Lirski M, Chroscicki P, Mroczek S, Januszewicz E, Dziembowski A, Koblowska M, Warscheid B, Chacinska A (2015).
  Nature. 524(7566):485-8.
• p53-Regulated Networks of Protein, mRNA, miRNA, and lncRNA Expression Revealed by Integrated Pulsed Stable Isotope Labeling With Amino Acids in Cell Culture (pSILAC) and Next Generation Sequencing (NGS) Analyses.
  Hünten S, Kaller M, Drepper F, Oeljeklaus S, Bonfert T, Erhard F, Dueck A, Eichner N, Friedel CC, Meister G, Zimmer R, Warscheid B, Hermeking H (2015).
  Mol Cell Proteomics. 14(10):2609-29.
• COA6 is a mitochondrial complex IV assembly factor critical for biogenesis of mtDNA-encoded COX2.
  Stroud DA, Maher MJ, Lindau C, Vögtle FN, Frazier AE, Surgenor E, Mountford H, Singh AP, Bonas M, Oeljeklaus S, Warscheid B, Meisinger C, Thorburn DR, Ryan MT (2015).
  Hum Mol Genet. 2015 24(19):5404-15.
• Redox Activation of the Universally Conserved ATPase YchF by Thioredoxin 1.
  Hannemann L, Suppanz I, Ba Q, MacInnes K, Drepper F, Warscheid B, Koch HG (2016).
  Antioxid Redox Signal. 24(3):141-56
• Phytoene Desaturase from Oryza sativa: Oligomeric Assembly, Membrane Association and Preliminary 3D-Analysis.
  Gemmecker S, Schaub P, Koschmieder J, Brausemann A, Drepper F, Rodriguez-Franco M, Ghisla S, Warscheid B, Einsle O, Beyer P (2015)
  PLoS One. 10(7):e0131717.
• YidC occupies the lateral gate of the SecYEG translocon and is sequentially displaced by a nascent membrane protein.
  Sachelaru I, Petriman NA, Kudva R, Kuhn P, Welte T, Knapp B, Drepper F, Warscheid B, Koch HG (2015).
  J Biol Chem. 290(23):14492.
• Cox17 Protein Is an Auxiliary Factor Involved in the Control of the Mitochondrial Contact Site and Cristae Organizing System.
  Chojnacka M, Gornicka A, Oeljeklaus S, Warscheid B, Chacinska A (2015).
  J Biol Chem. 290(24):15304-12.
• Functional Proteomics Identifies Acinus L as a Direct Insulin- and Amino Acid-Dependent Mammalian Target of Rapamycin Complex 1 (mTORC1) Substrate.
  Schwarz JJ, Wiese H, Toelle RC, Zarei M, Dengjel J, Warscheid B, Thedieck K (2015).
  Mol Cell Proteomics. 14(8):2042-55.
• Mitochondrial protein import receptors in Kinetoplastids reveal convergent evolution over large phylogenetic distances.
  Mani J, Desy S, Niemann M, Chanfon A, Oeljeklaus S, Pusnik M, Schmidt O, Gerbeth C, Meisinger C, Warscheid B, Schneider A (2015).
  Nat Commun. 26;6:6646.
• The mitochondrial heat shock protein 70 (Hsp70) and Hsp10 cooperate in the formation of Hsp60 complexes.
  Böettinger L, Oeljeklaus S, Guiard B, Rospert S, Warscheid B, Becker T (2015).
  J Biol Chem. 290(18):11611-22.
• Structural Insights into Ca(2+)-Calmodulin Regulation of Plectin 1a-Integrin ?4 Interaction in Hemidesmosomes.
  Song JG, Kostan J, Drepper F, Knapp B, de Almeida Ribeiro E Jr, Konarev PV, Grishkovskaya I, Wiche G, Gregor M, Svergun DI, Warscheid B, Djinovi?-Carugo K (2015).
  Structure. 23(3):558-70.
• Role of membrane contact sites in protein import into mitochondria.
  Horvath SE, Rampelt H, Oeljeklaus S, Warscheid B, van der Laan M, Pfanner N (2015).
  Protein Sci. 24(3):277-97.
• Assembly of ?-barrel proteins in the mitochondrial outer membrane.
  Höhr AI, Straub SP, Warscheid B, Becker T, Wiedemann N (2014).
  Biochim Biophys Acta. 1853(1):74-88.
• Quantitative phosphoproteomics reveals the protein tyrosine kinase Pyk2 as a central effector of olfactory receptor signaling in prostate cancer cells.
  Wiese H, Gelis L, Wiese S, Reichenbach C, Jovancevic N, Osterloh M, Meyer HE, Neuhaus EM, Hatt HH, Radziwill G, Warscheid B (2015).
  Biochim Biophys Acta. 1854(6):632-40.
• The mitochondrial ADP/ATP carrier associates with the inner membrane presequence translocase in a stoichiometric manner.
  Mehnert CS, Rampelt H, Gebert M, Oeljeklaus S, Schrempp SG, Kochbeck L, Guiard B, Warscheid B, van der Laan M (2014).
  J Biol Chem. 289(39):27352-62.
• Identification of microRNA targets by pulsed SILAC.
  Kaller M, Oeljeklaus S, Warscheid B, Hermeking H(2014).
  Methods Mol Biol. 1188:327-49.
• SILAC labeling of yeast for the study of membrane protein complexes.
  Oeljeklaus S, Schummer A, Suppanz I, Warscheid B (2014).
  Methods Mol Biol.1188:23-46.
• The INA complex facilitates assembly of the peripheral stalk of the mitochondrial F1Fo-ATP synthase.
  Lytovchenko O, Naumenko N, Oeljeklaus S, Schmidt B, von der Malsburg K, Deckers M, Warscheid B, van der Laan M, Rehling P (2014).
  EMBO J. 33(15):1624-38.
• Trypanosomal TAC40 constitutes a novel subclass of mitochondrial ?-barrel proteins specialized in mitochondrial genome inheritance.
  Schnarwiler F, Niemann M, Doiron N, Harsman A, Käser S, Mani J, Chanfon A, Dewar CE, Oeljeklaus S, Jackson CB, Pusnik M, Schmidt O, Meisinger C, Hiller S, Warscheid B, Schnaufer AC, Ochsenreiter T, Schneider A (2014).
  Proc Natl Acad Sci U S A. 111(21):7624-9.
• The membrane proteome of sensory cilia to the depth of olfactory receptors.
  Kuhlmann K, Tschapek A, Wiese H, Eisenacher M, Meyer HE, Hatt HH, Oeljeklaus S, Warscheid B (2014).
  Mol Cell Proteomics. 13(7):1828-43.
• Comparison of Alternative MS/MS and Bioinformatics Approaches for Confident Phosphorylation Site Localization.
  Wiese H, Kuhlmann K, Wiese S, Stoepel NS, Pawlas M, Meyer HE, Stephan C, Eisenacher M, Drepper F, Warscheid B (2013)
  J Proteome Res. 13(2):1128-1137
• Mitochondrial inner membrane protease promotes assembly of presequence translocase by removing a carboxy-terminal targeting sequence.
  Ieva R, Heißwolf AK, Gebert M, Vögtle FN, Wollweber F, Mehnert CS, Oeljeklaus S, Warscheid B, Meisinger C, van der Laan M, Pfanner N (2013).
  Nat Commun. 4:2853. doi: 10.1038/ncomms3853.
• Correction: The Proteome of Human Liver Peroxisomes: Identification of Five New Peroxisomal Constituents by a Label-Free Quantitative Proteomics Survey.
  Gronemeyer T, Wiese S, Ofman R, Bunse C, Pawlas M, Hayen H, Eisenacher M, Stephan C, Meyer HE, Waterham HR, Erdmann R, Wanders RJ, Warscheid B (2013).
  PLoS One. 8(10)
• A bacterial toxin catalyzing tyrosine glycosylation of Rho and deamidation of Gq and Gi proteins.
  Jank T, Bogdanovi? X, Wirth C, Haaf E, Spoerner M, Böhmer KE, Steinemann M, Orth JH, Kalbitzer HR, Warscheid B, Hunte C, Aktories K (2013).
  Nat Struct Mol Biol. 20(11):1273-80
• Mitochondrial translation factors of Trypanosoma brucei: elongation factor-Tu has a unique subdomain that is essential for its function.
  Cristodero M, Mani J, Oeljeklaus S, Aeberhard L, Hashimi H, Ramrath DJ, Lukeš J, Warscheid B, Schneider A (2013).
  Mol Microbiol. 90(4):744-55
• Coupling of mitochondrial import and export translocases by receptor-mediated supercomplex formation.
  Qiu J, Wenz LS, Zerbes RM, Oeljeklaus S, Bohnert M, Stroud DA, Wirth C, Ellenrieder L, Thornton N, Kutik S, Wiese S, Schulze-Specking A, Zufall N, Chacinska A, Guiard B, Hunte C, Warscheid B, van der Laan M, Pfanner N, Wiedemann N, Becker T (2013).
  Cell. 154(3):596-608
• A complex of Cox4 and mitochondrial Hsp70 plays an important role in the assembly of the cytochrome c oxidase.
  Böttinger L, Guiard B, Oeljeklaus S, Kulawiak B, Zufall N, Wiedemann N, Warscheid B, van der Laan M, Becker T (2013).
  Mol Biol Cell. 24(17):2609-19
• Redox proteomics uncovers peroxynitrite-sensitive proteins that help Escherichia coli to overcome nitrosative stress.
  Lindemann C, Lupilova N, Müller A, Warscheid B, Meyer HE, Kuhlmann K, Eisenacher M, Leichert LI (2013).
  J Biol Chem. 288(27):19698-714
• A combined approach of quantitative interaction proteomics and live-cell imaging reveals a regulatory role for ER reticulon homology proteins in peroxisome biogenesis.
  David C, Koch J, Oeljeklaus S, Laernsack A, Melchior S, Wiese S, Schummer A, Erdmann R, Warscheid B, Brocard C (2013).
  Mol Cell Proteomics. 12(9):2408-25.
• YidC occupies the lateral gate of the SecYEG translocon and is sequentially displaced by a nascent membrane protein.
  Sachelaru I, Petriman NA, Kudva R, Kuhn P, Welte T, Knapp B, Drepper F, Warscheid B, Koch HG (2013).
  J Biol Chem. 288(23):16295-307
• The proteome of human liver peroxisomes: identification of five new peroxisomal constituents by a label-free quantitative proteomics survey.
  Gronemeyer T, Wiese S, Ofman R, Bunse C, Pawlas M, Hayen H, Eisenacher M, Stephan C, Meyer HE, Waterham HR, Erdmann R, Wanders RJ, Warscheid B (2013).
  PLoS One. 8(2):e57395
• Localization of Rab Proteins to Peroxisomes: a Proteomics and Immunofluorescence Study.
  Gronemeyer T, Wiese S, Grinhagens S, Schollenberger L, Satiagraha A, Huber L, Meyer HE, Warscheid B, Just WW (2013).
  FEBS Lett. 2013 Feb 14;587(4):328-38
• Mitochondrial outer membrane proteome of Trypanosoma brucei reveals novel factors required to maintain mitochondrial morphology.
  *Niemann M, Wiese S, Mani J, Chanfon A, Jackson C, Meisinger C, *Warscheid B, *Schneider A (2013).
  Mol Cell Proteomics. 12(2):515-28
  *corresponding authors
• MITRAC links mitochondrial protein translocation to respiratory-chain assembly and translational regulation.
  Mick DU, Dennerlein S, Wiese H, Reinhold R, Pacheu-Grau D, Lorenzi I, Sasarman F, Weraarpachai W, Shoubridge EA, Warscheid B, Rehling P (2012).
  Cell. 151(7):1528-41.
• A universally conserved GTPase regulates the oxidative stress response in Escherichia coli.
  Wenk M, Ba Q, Erichsen V, Macinnes K, Wiese H, Warscheid B, Koch HG (2012).
  J Biol Chem. 287(52):43585-98
• Role of mitochondrial inner membrane organizing system in protein biogenesis of the mitochondrial outer membrane.
  Bohnert M, Wenz LS, Zerbes RM, Horvath SE, Stroud DA, von der Malsburg K, Müller JM, Oeljeklaus S, Perschil I, Warscheid B, Chacinska A, Veenhuis M, van der Klei IJ, Daum G, Wiedemann N, Becker T, Pfanner N, van der Laan M. (2012) 
  Mol Biol Cell 23:3948-3956.
• An essential novel component of the non-canonical mitochondrial outer membrane protein import system of trypanosomatids.
  Pusnik M, Mani J, Schmidt O, Niemann M, Oeljeklaus S, Schnarwiler F, Warscheid B, Lithgow T, Meisinger C, Schneider A. (2012).
  Mol Biol Cell 23 (17):3420-3428.
• Response to Zarsky et al.
  Pusnik M, Schmidt O, Perry AJ, Oeljeklaus S, Niemann M, Warscheid B, Meisinger C, Lithgow T, Schneider A (2012).
  Curr Biol. 22(12):R481-482.
• New insights into myosin phosphorylation during cyclic nucleotide mediated smooth muscle relaxation.
  Puetz S, Schroeter MM, Piechura H, Reimann L, Hunger MS, Lubomirov LT, Metzler D, Warscheid B, Pfitzer G (2012).
  J Muscle Res Cell Motil. 33(6):471-83
• SILAC for the study of mammalian cell lines and yeast protein complexes.
  Piechura H, Oeljeklaus S, Warscheid B (2012).
  Methods Mol Biol. 893:201-221.  
• Find Pairs – the module for protein quantification of the PeakQuant software suite.
  Eisenacher M, Kohl M, Wiese S, Hebeler R, Meyer HE, Warscheid B, Stephan C. (2012).
  OMICS 16(9):457-467.
• Role of MINOS in Mitochondrial Membrane Architecture: Cristae Morphology and Outer Membrane Interactions Differentially Depend on Mitofilin Domains.
  Zerbes RM, Bohnert M, Stroud DA, von der Malsburg K, Kram A, Oeljeklaus S, Warscheid B, Becker T, Wiedemann N, Veenhuis M, van der Klei IJ, Pfanner N, van der Laan M. (2012).
  J Mol Biol. Sep 14;422(2):183-91.
• Mgr2 promotes coupling of the mitochondrial presequence translocase to partner complexes.
  Gebert M, Schrempp SG, Mehnert CS, Heißwolf AK, Oeljeklaus S, Ieva R, Bohnert M, von der Malsburg K, Wiese S, Kleinschroth T, Hunte C, Meyer HE, Haferkamp I, Guiard B, Warscheid B, Pfanner N, van der Laan M. (2012).
  J Cell Biol. 197:595-604.
• Identification of Core Components and Transient Interactors of the Peroxisomal Importomer by Dual-track SILAC Analysis.
  Oeljeklaus S, Reinartz BS, Wolf J, Wiese S, Tonillo J, Podwojski K, Kuhlmann K, Stephan C, Meyer HE, Schliebs W, Brocard C, Erdmann R, Warscheid B. (2012).
  J Proteome Res. 11(4):2567-2580.
• Rcf1 Mediates Cytochrome Oxidase Assembly and Respirasome Formation, Revealing Heterogeneityof the Enzyme Complex.
  Vukotic M, Oeljeklaus S, Wiese S, Voegtle FN, Meisinger C, Meyer HE, Zieseniss A, Katschinski DM, Jans DC, Jakobs S, Warscheid B, Rehling P, Deckers M (2012).
  Cell Metabolism (2012), doi:10.1016/j.cmet.2012.01.016 
• Comparative profiling of the peroxisomal proteome of wildtype and Pex7 knockout mice by quantitative mass spectrometry.
  Wiese S, Gronemeyer T, Ofman R, Bunse C, Renz C, Meyer HE, Brites P, Wanders RJA, Warscheid B (2011).
  Int J Mass Spectrom, doi:10.1016/j.ijms.2011. 09.005.
• Promiscuous targeting of polytopic membrane proteins to SecYEG or YidC by the Escherichia coli signal recognition particle.
  Welte T, Kudva R, Kuhn P, Sturm L, Braig D, Müller M, Warscheid B, Drepper F, Koch HG (2012).
  Mol Biol Cell 23(3):464-79
• Dual function of Sdh3 in the respiratory chain and TIM22 protein translocase of the mitochondrial inner membrane.
  Gebert N, Gebert M, Oeljeklaus S, von der Malsburg K, Stroud DA, Kulawiak B, Wirth C, Zahedi RP, Dolezal P, Wiese S, Simon O, Schulze-Specking A, Truscott KN, Sickmann A, Rehling P, Guiard B, Hunte C, Warscheid B, van der Laan M, Pfanner N, Wiedemann N (2011).
  Mol Cell 44(5):811-8.
• Composition and topology of the endoplasmic reticulum-mitochondria encounter structure.
  Stroud DA, Oeljeklaus S, Wiese S, Bohnert M, Lewandrowski U, Sickmann A, Guiard B, van der Laan M, Warscheid B, Wiedemann N (2011).
  J Mol Biol 413(4):743-50
• Dual role of mitofilin in mitochondrial membrane organization and protein biogenesis.
  von der Malsburg K, Müller JM, Bohnert M, Oeljeklaus S, Kwiatkowska P, Becker T, Loniewska-Lwowska A, Wiese S, Rao S, Milenkovic D, Hutu DP, Zerbes RM, Schulze-Specking A, Meyer HE, Martinou JC, Rospert S, Rehling P, Meisinger C, Veenhuis M, Warscheid B, van der Klei IJ, Pfanner N, Chacinska A, van der Laan M (2011).
  Dev Cell 21(4):694-707
• Mitochondrial preprotein translocase of trypanosomatids has a bacterial origin.
  Pusnik M, Schmidt O, Perry AJ, Oeljeklaus S, Niemann M, Warscheid B, Lithgow T, Meisinger C, Schneider A (2011)
  Curr Biol 21(20):1738-43.
• Ubp15p, an ubiquitin hydrolase associated with the peroxisomal export machinery.
  Debelyy MO, Platta HW, Saffian D, Hensel A, Thoms S, Meyer HE, Warscheid B, Girzalsky W, Erdmann R (2011)
  J Biol Chem 286(32):28223-34
• Genome-wide characterization of miR-34a induced changes in protein and mRNA expression by a combined pulsed SILAC and micro-array analysis.
  Kaller, M., Liffers, S. T., Oeljeklaus, S., Kuhlmann, K, Röh, S., Hoffmann, R., Warscheid, B., Hermeking, H (2011).
  Mol Cell Proteomics 10(8):M111.010462.
• Pex14 is required for microtubule-based peroxisome motility in human cells.
  Bharti P, Schliebs W, Schievelbusch T, Neuhaus A, David C, Wiese S, Meyer HE, Kock K, Herrmann C, Warscheid B, Theiss C, Erdmann R (2011) 
  J Cell Science 15;124(Pt 10):1759-68.
• The bacterial SRP receptor, SecA and the ribosome use overlapping binding sites on the SecY translocon.
  Kuhn P, Weiche B, Sturm L, Sommer E, Drepper F, Warscheid B, Sourjik V, Koch HG (2011)
  Traffic 12(5):563-78..
• Cytoscape: software for visualization and analysis of biological networks.
  Kohl M, Wiese S, Warscheid B (2011)
  Methods Mol Biol. 696:291-303.
• RhoA regulates peroxisome association to microtubules and the actin cytoskeleton.
  Schollenberger L, Gronemeyer T, Huber CM, Lay D, Wiese S, Meyer HE, Warscheid B, Saffrich R, Peränen J, Gorgas K, Just WW (2010).
  PLoS One. 5(11):e13886.
• Coa3 and Cox14 are essential for negative feedback regulation of COX1 translation in mitochondria.
  Mick DU, Vukotic M, Piechura H, Meyer HE, Warscheid B, Deckers M, Rehling P (2010)
  J Cell Biol. 191(1):141-54.
• Identification of PEX33, a novel component of the peroxisomal docking complex in the filamentous fungus Neurospora crassa. 
  Managadze D, Würtz C, Wiese S, Girzalsky W, Meyer HE, Schneider M, Erdmann R, Warscheid B, Rottensteiner HP (2010)  
  Eur J Cell Biol. 89(12):955-64.
• A proteomic approach towards the identification of the matrix protein content of the two types of microbodies in Neurospora crassa.
  Managadze D, Würtz C, Wiese S, Meyer HE, Niehaus G, Erdmann R, Warscheid B, Rottensteiner HP (2010) 
  Proteomics. 10(18):3222-34.
• Structure and function of intact photosystem 1 monomers from the cyanobacterium Thermosynechococcus elongatus.
  El-Mohsnawy E, Kopczak MJ, Schlodder E, Nowaczyk M, Meyer HE, Warscheid B, Karapetyan NV, Rögner M (2010).
  Biochemistry. 49(23):4740-51.
• A salivary serine protease of the haematophagous reduviid Panstrongylus megistus: sequence characterization, expression pattern and characterization of proteolytic activity.
  Meiser CK, Piechura H, Meyer HE, Warscheid B, Schaub GA, Balczun C (2010).
  Insect Mol. Biol. 19(3):409-421.
• Top-Down De Novo Protein Sequencing of a 13.6 kDa Camelid Single Heavy Chain Antibody by MALDI-TOF/TOF Mass Spectrometry.
  Resemann A, Wunderlich D, Rothbauer U, Warscheid B, Leonhardt H, Fuchser J, Kuhlmann K, Suckau D (2010).
  Anal. Chem. 82(8):3283-3292.
• Uncoupled responses of Smad4-deficient cancer cells to TNFa result in secretion of monomeric laminin-?2.
  Zboralski D, Warscheid B, Klein-Scory S, Bassel Malas M, Becker H, Böckmann M, Meyer HE, Schmiegel W, Simon-Assmann P, Schwarte-Waldhoff I (2010).
  Mol Cancer 9(1):65.
• Immunoscreening of the extracellular proteome of colorectal cancer cells.
  Klein-Scory S, Kübler S, Diehl H, Eilert-Micus C, Schöneck A, Reinacher-Schick A, Stühler K, Warscheid B, Meyer HE, Schmiegel W, Schwarte-Waldhoff I (2010).
  BMC Cancer, 10(1):70.
• Kazal-type inhibitors in the stomach of Panstrongylus megistus (Triatominae, Reduviidae).
  Meiser CK, Piechura H, Werner T, Dittmeyer-Schäfer S, Meyer HE, Warscheid B, Schaub GA, Balczun C (2010). 
  Insect Biochem Mol Biol. 40(4):345-353.
• Tmem16b is a calcium-gated chloride channel specifically expressed in the cilia of olfactory sensory neurons.
  Rasche S, Toetter B, Adler J, Doerner JF, Tschapek A, Kurtenbach S, Hatt H, Meyer HE, Warscheid B, Neuhaus EM (2010).
  Chem Senses. 35(3):239-45.
• Peroxisomal Targeting of PTS2-pre-import complexes in the yeast Saccharomyces cerevisiae
  Grunau S, Schliebs W, Funke R, Neufeld C, Reinartz B, Meyer HE, Warscheid B, Girzalsky W, Erdmann R (2009).  
  Traffic, 10(4):451-60.
• New dimensions in the study of protein complexes using quantitative mass spectrometry.
  Oeljeklaus S, Meyer HE, Warscheid B (2009)
  FEBS Lett., 5;583(11):1674-1683.
• Identification of proteomic differences between squamous cell carcinoma of the lung and bronchial epithelium.
  Poschmann G, Sipos B, Sitek B, Ulrich A, Wiese S, Stephan C, Warscheid B, Klöppel G, Vander Borgh A, Ramaekers F, Meyer HE, Stühler K (2009).
  Mol Cell Proteomics, 8(5):1105-16.
• Advancements in plant proteomics using quantitative mass spectrometry.
  Oeljeklaus S, Meyer HE, Warscheid B (2009). 
  J Proteomics, 72(3):545-554
• Detection of novel biomarkers of liver cirrhosis by proteomic analysis.
  Mölleken C, Sitek B, Henkel C, Poschmann G, Sipos B, Wiese S, Warscheid B, Reiser M, Friedman SL, Holmskov U, Schlosser A, Klöppel G, Schmiegel W, Meyer HE, Stühler K (2009) 
  Hepatology, 49(4):1257-1266.
• Members of the E2D (UbcH5) family mediate the ubiquitination of the conserved cysteine of Pex5p, the peroxisomal import receptor.
  Grou CP, Carvalho AF, Pinto MP, Wiese S, Piechura H, Meyer HE, Warscheid B, Sá-Miranda C, Azevedo JE (2008)
  J Biol Chem., 283(21):14190-14197.
• Early leaf senescence is associated with an altered cellular redox balance in Arabidopsis cpr5/old1 mutants.
  Jing HC, Hebeler R, Oeljeklaus S, Sitek B, Stühler K, Meyer HE, Hille J, Warscheid B, Dijkwel PP (2008). 
  Plant Biol. (Stuttg). Sep;10 Suppl 1:85-98.
• Novel insight into stimulus-induced plasticity of the olfactory epithelium in Mus musculus by quantitative proteomics.
  Barbour J, Neuhaus EM, Piechura H, Stoepel N, Brunert EMD, Mashukova A, Sitek B, Stühler K, Meyer HE, Hatt H, Warscheid B (2008) 
  J Proteom. Res., 7(4):1594-605.
• Towards multi-dimensional liquid chromatography separation of proteins using fluorescence and isotope-coded protein labeling for quantitative proteomics.
  Tribl F, Lohaus C, Dombert T, Langenfeld E, Piechura H, Warscheid B, Meyer HE, Marcus K (2008).
  Proteomics, 8(6):1204-11.
• Systematic approach to group-specific isotopic labeling of proteins for vibrational spectroscopy.
  Warscheid B, Brucker S, Kallenbach A, Meyer HE, Gerwert K, Kötting C (2008).
  Vibrational Spectroscopy, 48(1):28-36.
• Study of early leaf senescence in Arabidopsis thaliana by quantitative proteomics using reciprocal ¹⁴N/¹⁵N-labeling and difference gel electrophoresis.
  Hebeler R, Oeljeklaus S, Reidegeld KA, Eisenacher M, Stephan C, Sitek B, Stühler K, Meyer HE, Sturre MJG, Dijkwel PP, Warscheid B. (2008).
  Mol Cell Proteomics, 7(1):108-120.
• Characterization of mouse kidney peroxisomes by tandem mass spectrometry and protein correlation profiling.
  Wiese S, Gronemeyer T, Ofman R, Kunze M, Grou CP, Almeida JA, Eisenacher M, Stephan C, Hayen H, Schollenberger L, Korosec T, Waterham HR, Schliebs W, Erdmann R, Berger J, Meyer HE, Just W, Azevedo JE, Wanders RJA, Warscheid B (2007) 
  Mol Cell Proteomics, 6(12):2045-57.
• Shy1 couples Cox1 translational regulation to cytochrome c oxidase assembly.
  Mick DU, Wagner K, van der Laan M, Perschil I, Pawlas M, Meyer HE, Warscheid B, Rehling P (2007). 
  EMBO J. 26(20), 4347-4358.
• Protein labeling by iTRAQ: A new tool for quantitative mass spectrometry in proteome research.
  Wiese S, Reidegeld KA, Meyer HE, Warscheid B (2007). 
  Proteomics 7 (3), 340?350.  
• Psb27, a cyanobacterial lipoprotein, is involved in the repair cycle of photosystem II.
  Nowaczyk MM, Hebeler R, Schlodder E, Meyer HE, Warscheid B, Rögner M (2006).
  Plant Cell 18 (11), 3121?3131.
• Mdm38 interacts with ribosomes and is a component of the mitochondrial protein export machinery.
  Frazier E, Taylor RD, Mick DU,Warscheid B, Stoepel N, Meyer HE, Ryan MT, Guiard B, Rehling P (2006). 
  J. Cell Biol. 172 (4), 553?564.
• A targeted proteomics approach to the rapid identification of bacterial cell mixtures by MALDI mass spectrometry.
  Warscheid B Fenselau C (2004). 
  Proteomics 4 (10), 2877?2892.
• Complete sequencing of small acid-soluble proteins from Bacillus globigii.
  Whiteaker J, Warscheid B, Pribil P, Hathout Y, Fenselau C (2004). 
  J. Mass Spectrom. 39 (10), 1113?1121.
• Bacillus spore identification via proteolytic peptide mapping with a miniaturized MALDI-TOF mass spectrometer.
  English RD, Warscheid B, Fenselau C, Cotter RJ (2003). 
  Anal. Chem. 75 (24), 6886?6893.
• Characterization of Bacillus spore species and their mixtures using post-source decay with a curved-field reflectron.
  Warscheid B, Fenselau C (2003). 
  Anal. Chem. 75 (20), 5618?5627.
• MALDI analysis of Bacilli in spore mixtures by applying a quadrupole ion trap time?of-flight tandem mass spectrometer.
  Warscheid B, Jackson K, Sutton C, Fenselau C (2003). 
  Anal. Chem. 75 (20), 5608?5617.
• Miniaturized time-of-flight mass spectrometers for bioagent detection and identification. 
  Cotter RJ, English RD, Warscheid B, Hardy A, Gardner BD (2003).
  Jap. Mass Spectrom. Soc. 51 (1), 36?41.

TOP

Book Chapters

• Proteomics of renal peroxisomes.
  Gronemeyer T, Wiese S, Christian S, Ofman R, Wanders RJA, Meyer HE, Warscheid B (2009) 
  in: Thongboonkerd, V. (editor), Renal and Urinary Proteomics, Wiley-VCH, Weinheim, Germany; November 2009, 77-91.
• Chapter 17 “Mass spectrometry-driven approaches to quantitative proteomics and beyond”.
  Oeljeklaus S, Barbour J, Meyer HE, Warscheid B (2008)
  In: D. Barceló, editor: Comprehensive Analytical Chemistry, Vol 52, Protein Mass Spectrometry, Julian P. Whitelegge, Elsevier BV, Elsevier, 2009, Amsterdam, The Netherlands, 411-447.
• A practical guideline to electrospray ionization mass spectrometry for proteomics application.
  Barbour J, Wiese S, Meyer HE, Warscheid B (2008)
  von Hagen J, Andrecht S (eds.), Wiley-VCH, Weinheim; March 2008.
• A targeted proteomics approach to the rapid identification of bacterial cell mixtures by matrix-assisted laser desorption/ionization mass spectrometry.
  Warscheid B, Fenselau C (2007). 
  In: Jungblut, P.R. and Hecker, M. (editors), Proteomics of Microbial Pathogens, Wiley-VCH, Weinheim, Germany.
• Chapter 15 “Massenspektrometrie” and chapter 40 “Proteomanalyse” (co-author)
  Warscheid B (2006). 
  in: Lottspeich F, Engels JW (editors). Bioanalytik, 2nd edition, Elsevier, München, Germany.
• Biological Mass Spectrometry: Basics and Drug Discovery Related Approaches.
  Warscheid B (2006)
  in: Hamacher M, Marcus K, Stuehler K, van Hall A, Warscheid B, Meyer HE (editors), Proteomics in Drug Research, Wiley-VCH, Weinheim, Germany.

TOP